Essential readings

Here is a growing list of some of my favourite articles on data analysis; mostly articles I recommend to students or when reviewing or editing papers.

Review & position papers

Tukey, J.W. (1969) Analyzing Data – Sanctification or Detective Work? American Psychologist, 24, 83-91. [inspiring thoughts from a true visionary, hinting at what will become data science]

Wagenmakers, E.J. (2007) A practical solution to the pervasive problems of p values. Psychonomic bulletin & review, 14, 779-804. [one of the best summaries of problems with p values]

Shmueli, Galit. To Explain or to Predict?. Statist. Sci. 25 (2010), no. 3, 289–310. doi:10.1214/10-STS330.

Fiedler, K. (2011). Voodoo Correlations Are Everywhere—Not Only in Neuroscience. Perspectives on Psychological Science, 6(2), 163–171.

Button, K.S., Ioannidis, J.P., Mokrysz, C., Nosek, B.A., Flint, J., Robinson, E.S. & Munafo, M.R. (2013) Power failure: why small sample size undermines the reliability of neuroscience. Nature reviews. Neuroscience, 14, 365-376.

Gelman, A., & Carlin, J. (2014). Beyond Power Calculations: Assessing Type S (Sign) and Type M (Magnitude) Errors. Perspectives on Psychological Science, 9(6), 641–651.

Forstmeier, W., Wagenmakers, E.J. & Parker, T.H. (2016) Detecting and avoiding likely false-positive findings – a practical guide. Biol Rev Camb Philos Soc. [best summary of statistical, experimental and experimenter issues leading to false positives]

Understanding p values

Greenland, S., Senn, S.J., Rothman, K.J. et al. (2016) Statistical tests, P values, confidence intervals, and power: a guide to misinterpretations. Eur J Epidemiol 31: 337.

Ronald L. Wasserstein & Nicole A. Lazar (2016) The ASA’s Statement on p-Values: Context, Process, and Purpose, The American Statistician, 70:2, 129-133, DOI: 10.1080/00031305.2016.1154108

A world without mindless dichotomies (p<0.05)

Meehl, P.E. (1997) The Problem Is Epistemology, Not Statistics: Replace Significance Tests by Confidence Intervals and Quantify Accuracy of Risky Numerical Predictions. In: Harlow, L., Mulaik, S.A. and Steiger, J.H., Eds., What If There Were No Significance Tests? Erlbaum, Mahwah, NJ, 393-425.

Cumming, G. (2014). The New Statistics: Why and How. Psychological Science, 25(1), 7–29.

Kruschke, J.K. & Liddell, T.M. (2018) The Bayesian New Statistics: Hypothesis testing, estimation, meta-analysis, and power analysis from a Bayesian perspective. Psychon Bull Rev 25: 178.

Gelman, A. (2018). The Failure of Null Hypothesis Significance Testing When Studying Incremental Changes, and What to Do About It. Personality and Social Psychology Bulletin, 44(1), 16–23.

Blakeley B. McShane, David Gal, Andrew Gelman, Christian Robert, Jennifer L. Tackett (2018) Abandon Statistical Significance. arXiv [there is no need for arbitrary thresholds, let’s embrace uncertainty!]

Valentin Amrhein​, David Trafimow & Sander Greenland (2018) Inferential statistics as descriptive statistics: there is no replication crisis if we don’t expect replication. PeerJ Preprints [scientific life without zombie thresholds – refreshing]

Solutions to common issues

Jaeger, T.F. (2008) Categorical Data Analysis: Away from ANOVAs (transformation or not) and towards Logit Mixed Models. J Mem Lang, 59, 434-446.

MacCallum, R.C., Zhang, S., Preacher, K.J. & Rucker, D.D. (2002) On the practice of dichotomization of quantitative variables. Psychological Methods, 7, 19-40.

Sassenhagen, J. & Alday, P.M. (2016) A common misapplication of statistical inference: nuisance control with null-hypothesis significance tests. Brain and Language

Beyond power calculations: planning for precision

Gelman, A. & Carlin, J. (2014) Beyond Power Calculations: Assessing Type S (Sign) and Type M (Magnitude) Errors. Perspect Psychol Sci, 9, 641-651.

Maxwell, S.E., Kelley, K. & Rausch, J.R. (2008) Sample size planning for statistical power and accuracy in parameter estimation. Annu Rev Psychol, 59, 537-563.

Peters, G.-J.Y. & Crutzen, R. (2017) Knowing exactly how effective an intervention, treatment, or manipulation is and ensuring that a study replicates: accuracy in parameter estimation as a partial solution to the replication crisis. PsyArXiv. doi:10.31234/

Rothman, K.J. & Greenland, S. (2018) Planning Study Size Based on Precision Rather Than Power. Epidemiology, 29, 599-603.

Data visualisation

Allen, E.A., Erhardt, E.B. & Calhoun, V.D. (2012) Data visualization in the neurosciences: overcoming the curse of dimensionality. Neuron, 74, 603-608.

Anscombe, F.J. (1973) Graphs in Statistical Analysis. Am Stat, 27, 17-21.

Weissgerber, T.L., Milic, N.M., Winham, S.J. & Garovic, V.D. (2015) Beyond bar and line graphs: time for a new data presentation paradigm. PLoS Biol, 13, e1002128.

Weissgerber, T.L., Garovic, V.D., Winham, S.J., Milic, N.M. & Prager, E.M. (2016) Transparent reporting for reproducible science. J Neurosci Res, 94, 859-864.

Wilcox, R.R. (2006) Graphical methods for assessing effect size: Some alternatives to Cohen’s d. Journal of Experimental Education, 74, 353-367.

Data description

DeCarlo, L.T. (1997) On the meaning and use of kurtosis. Psychol. Meth., 2, 292-307.

Data interpretation

Wagenmakers et al. (2012) On the interpretation of removable interactions: A survey of the field 33 years after Loftus. Mem. Cogn., 40:145-160. [mandatory read for anyone dealing with or teaching how to interpret statistical interactions]

Robust estimation

Hubert, M., Rousseeuw, P. J., & Van Aelst, S. (2008). High-breakdown robust multivariate methods. Statistical Science, 92-119. [includes robust alternatives to the Mahalanobis distance]

Wilcox, R.R. & Keselman, H.J. (2003) Modern Robust Data Analysis Methods: Measures of Central Tendency. Psychological Methods, 8, 254-274. [introduction to robust estimation – in particular how to deal with skewness and outliers]

Leave a Reply

Fill in your details below or click an icon to log in: Logo

You are commenting using your account. Log Out /  Change )

Google photo

You are commenting using your Google account. Log Out /  Change )

Twitter picture

You are commenting using your Twitter account. Log Out /  Change )

Facebook photo

You are commenting using your Facebook account. Log Out /  Change )

Connecting to %s